Kayunga District Administration is headed by the Chief Administrative Officer Mr. Ashaba Allan Ganafa as the technical head of all civil servants in the District.
Kayunga District has 12 departments and units.
1. Adminstration department headed by the Deputy Chief Administrative Officer , Mr Otim Benson Humphrey
2. Finance & Planning department headed by the Chief Finance Officer Mr. Lukande Paul Rogers
3.Education department headed by the District Education Officer, Mrs Alice Adoya
4. Health department headed by the District Health Officer, Dr. Matovu Ahmed
5. Community Based Services headed by the District Community Development Officer Ms Nandawula Moureen
6. Natural Resources Department headed by the District Natural Resources Officer, Mr Byabagambi Francis
7.Production Department headed by the District Production Officer, Dr. Mugabi David
8. Technical Works headed by the District Engineer, Eng. Wazimbe Jonathan
9. Council, Boards & Commissions headed by Mr. Higenyi Jackson
10.Trade and Commercial Services headed by, the district Commercial Officer, Mr. Watuwa Muzamir
11. Internal Audit headed by the Ag. District Internal Audit, Mr. Muyinda Joseph
12. District Planning Unit headed by the District Planner, Nanyanzi Hajarah